GRAS Family from Maize
Required domains for GRAS family:PF03514
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The GRAS family of transcription factors are plant specific proteins whose name is derived from the first three members identified and studied: GAI (GIBBERELLIN INSENSITIVE), RGA (REPRESSOR OF GAI), and SCR (SCARECROW). Members of this family are characterized by highly conserved carboxy terminal region consisting of five motifs arranged in the order of LHR I (Leucine Heptad Repeat I), the VHIID motif, LHRII (Leucine Heptad Repeat II), the PFYRE motif and the SAW motif and a variable amino terminal region (Pysh et al., 1999). The LHRs are important for protein dimerization, whereas VHIID, PFYRE and SAW have repressor function (Itoh et al., 2002). The length and sequence variable N-terminal domain made up of homopolymeric amino acid residues is intrinsically disordered and are involved in molecular recognition, thus members of this family act as hubs in several protein-protein interactions and thereby not only regulating processes like plant growth and development but also playing crucial role in many signaling pathways (Sun et al., 2011). DELLA subfamily consists of conserved DELLA and TVHYNP region at N-terminal and includes GAI and RGA proteins that are important regulators of gibberellin, light and jasmonate signaling (Sun TP., 2011). SCR and SHR play role in regulating root growth, root radial patterning and leaves cell proliferation (Benfy et al., 1993, Helariuttaet al.,2000, Dhondt et al., 2010)
Eighty six GRAS family of transcription factors are present in Maize with amino acid length of 111-734 distributed into 8 subfamilies namely SCL3 (Scarecrow-like 3), HAM (HAIRY MERISTEM), LS (Lateral Suppressor), SCR (SCARECROW), DELLA, SHR (Short-root), PAT1 (Phytochrome A signal transduction 1) and LISCL (Lilium longiflorum Scarecrow-like) named after their common feature or one of the member (Guo et al., 2017). Arabidopsis, rice and sorghum consist of 34, 60 and 81 putative GRAS genes respectively divided into at least 13 subfamilies (Liu et al., 2014., Fan et al., 2021)
A Slender Rice1 (SLR1) protein identified by loss of function mutant (elongated stem, leaf sheath and blade) in rice and gain of function mutant of GAI in Arabidopsis belongs to DELLA subfamily (Ikeda et al., 2001, Peng et al., 1997). SLR1 act as a repressor of gibberellin acid signaling (GA) since its level in the nucleus changes with respect to presence or absence of GA. Domain analysis of SLR1 revealed presence of GA signal perception domain, dimer formation domain, repressor domain and regulatory domain (Itoh et al., 2002). Rice, OsSCL7 identified from transcriptomic analysis of early defense response to Magnaporthe oryzae, act as a positive regulator of defense responsive genes and its stability is affected by GF14c, a 14-3-3 protein. Also OsSCL7 mutation and overexpression resulted in developmental and growth defects implying its role in plant growth (Lue et al., 2022). A maize specific Indeterminate 1 regulator which belongs to Indeterminate domain (IDD) family of transcription factor contains highly conserved four zinc finger motifs that forms ID domain and acts as a flowering transition regulator (Colasanti et al., 2006, Colasanti et al., 1998). AtIDD interacts with DELLA subfamily and regulates the expression of genes involved in GA synthesis (GA3ox1) and signaling (SCL3) (Aoyanagi et al., 2020)
Last updated June 2023 by Ankita Abnave
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Aoyanagi T, Ikeya S, Kobayashi A, Kozaki A. Gene Regulation via the Combination of Transcription Factors in the INDETERMINATE DOMAIN and GRAS Families. Genes (Basel). 2020 Jun 2;11(6):613. doi: 10.3390/genes11060613. PMID: 32498388; PMCID: PMC7349898.