Species and family pages include several links to export gene lists and sequences
Download gene list - download a table where each row represents a gene, similar to the on-screen tables on famiy pages
Download sequences (csv) - download a table where each row contains a transcript ID and an amino acid sequence
Download sequences (fasta) - download transcript IDs and amino acid sequences in fasta format
Maize Genome Versions and Translations
Grassius supports 3 version of the Maize genome:
Maize genome B73 RefGen_v3
Maize genome B73 RefGen_v4
Maize genome B73 RefGen_v5
When viewing Maize data, click radio buttons to select the genome version. Each genome version has a different set of gene IDs, transcript IDs, and sequences. The selected genome versions determines the primary gene ID shown in on-screen gene lists, and downloaded csv files. Downloadable sequences are different for each genome version.
To use the Custom Family Builder, at least one required domain must be selected. Using the textbox under "Required Domains", start typing a domain ID such as "PF00010". Choose a domain from the auto-complete dropdown. A table of matching maize transcripts will appear. The selected domain will be given a color-code which is shown under "required" domains and in the "Domains" column in the table.
Custom families can be saved using bookmarks in your web browser. Share the url in your address bar to allow others to see your custom family. example